White Rose University Consortium logo
University of Leeds logo University of Sheffield logo York University logo

Gaussian Process Based Approaches for Survival Analysis

Saul, Alan D (2016) Gaussian Process Based Approaches for Survival Analysis. PhD thesis, University of Sheffield.

Available under License Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 UK: England & Wales.

Download (10Mb) | Preview


Traditional machine learning focuses on the situation where a fixed number of features are available for each data-point. For medical applications each individual patient will typically have a different set of clinical tests associated with them. This results in a varying number of observed per patient features. An important indicator of interest in medical domains is survival information. Survival data presents its own particular challenges such as censoring. The aim of this thesis is to explore how machine learning ideas can be transferred to the domain of clinical data analysis. We consider two primary challenges; firstly how survival models can be made more flexible through non-linearisation and secondly methods for missing data imputation in order to handle the varying number of observed per patient features. We use the framework of Gaussian process modelling to facilitate conflation of our approaches; allowing the dual challenges of survival data and missing data to be addressed. The results show promise, although challenges remain. In particular when a large proportion of data is missing, greater uncertainty in inferences results. Principled handling of this uncertainty requires propagation through any Gaussian process model used for subsequent regression.

Item Type: Thesis (PhD)
Academic Units: The University of Sheffield > Faculty of Engineering (Sheffield) > Computer Science (Sheffield)
The University of Sheffield > Faculty of Science (Sheffield) > Computer Science (Sheffield)
Identification Number/EthosID: uk.bl.ethos.721847
Depositing User: Mr Alan Daniel Saul
Date Deposited: 01 Sep 2017 11:22
Last Modified: 12 Oct 2018 09:43
URI: http://etheses.whiterose.ac.uk/id/eprint/17946

You do not need to contact us to get a copy of this thesis. Please use the 'Download' link(s) above to get a copy.
You can contact us about this thesis. If you need to make a general enquiry, please see the Contact us page.

Actions (repository staff only: login required)